Info • Coccidioides posadasii C735 delta SOWgp


The genome sequence and gene models of Coccidioides posadasii C735 delta SOWgp were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Nov 1, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in the removal of 105 models from C. posadasii and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Coccidioides posadasii C735 delta SOWgp release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.94
Sequencing read coverage depth 8x
# of contigs 54
# of scaffolds 54
# of scaffolds >= 2Kbp 54
Scaffold N50 4
Scaffold L50 (Mbp) 2.38
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.40, 4.39, 3.09

Gene Models FilteredModels1
length (bp) of: average median
gene 2056 1730
transcript 1866 1543
exon 568 331
intron 85 68
protein length (aa) 521 437
exons per gene 3.28 3
# of gene models 7124

Genome Reference(s)



This project was not sequenced at the JGI.