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Info • Coccomyces strobi CBS 202.91 v1.0

Status

[Dec 2015] The Coccomyces strobi CBS 202.91 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Coccomyces strobi v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.67
Sequencing read coverage depth 147.9x
# of contigs 609
# of scaffolds 509
# of scaffolds >= 2Kbp 387
Scaffold N50 56
Scaffold L50 (Mbp) 0.17
# of gaps 100
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.77, 0.61, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28630 27655 96.6%
Ests est.fasta 121354324 118511322 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1789 1560
transcript 1603 1373
exon 527 325
intron 93 62
description:
protein length (aa) 453 372
exons per gene 3.04 3
# of gene models 11537


Collaborators

Jon Magnuson at the Pacific Northwest National Laboratory

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.