Info • Coemansia mojavensis RSA 71 v1.0

Status

[March 2018] The Coemansia mojavensis RSA 71 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Coemansia mojavensis RSA 71 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.29
Sequencing read coverage depth 675.65x
# of contigs 55
# of scaffolds 55
# of scaffolds >= 2Kbp 53
Scaffold N50 7
Scaffold L50 (Mbp) 0.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.67, 1.25, 1.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 12499 10702 85.6%
Ests est.fasta 179419555 177734284 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1621 1335
transcript 1552 1275
exon 1033 794
intron 139 75
description:
protein length (aa) 463 369
exons per gene 1.50 1
# of gene models 6859


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.