Info • Coemansia spiralis RSA 1278 v1.0

Status

[April 2017] The Coemansia spiralis RSA 1278 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Coemansia spiralis RSA 1278 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.93
Sequencing read coverage depth 505.95x
# of contigs 34
# of scaffolds 34
# of scaffolds >= 2Kbp 34
Scaffold N50 8
Scaffold L50 (Mbp) 0.99
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.51, 1.36, 1.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16901 14797 87.6%
Ests est.fasta 110765331 107803100 97.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1621 1316
transcript 1517 1216
exon 965 682
intron 185 116
description:
protein length (aa) 443 342
exons per gene 1.57 1
# of gene models 7247


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.