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Info • Colletotrichum abscissum IMI 504890

Status

The genome sequence and gene prediction of Colletotrichum abscissum IMI 504890 have not been determined by the Joint Genome Institute (JGI), but were provided by Riccardo Baroncelli at the University of Salamanca. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

Summary statistics for the Colletotrichum abscissum release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.94
Sequencing read coverage depth
# of contigs 565
# of scaffolds 560
# of scaffolds >= 2Kbp 329
Scaffold N50 19
Scaffold L50 (Mbp) 0.96
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.18, 2.14, 1.86


Gene Models ExternalModels
length (bp) of: average median
gene 1459 1221
transcript 1290 1068
exon 486 271
intron 104 66
description:
protein length (aa) 430 356
exons per gene 2.66 2
# of gene models 17280


Funding

This project was not sequenced at the JGI.