Info • Colletotrichum cereale CBS 129662 v1.0

Status

[January 2017] The Colletotrichum cereale CBS 129662 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum cereale v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.15
Sequencing read coverage depth 141.8x
# of contigs 1803
# of scaffolds 1509
# of scaffolds >= 2Kbp 1317
Scaffold N50 182
Scaffold L50 (Mbp) 0.08
# of gaps 294
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 0.37, 0.35, 0.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58564 55491 94.8%
Ests est.fasta 189069527 165496402 87.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1552 1286
transcript 1396 1134
exon 537 338
intron 99 66
description:
protein length (aa) 404 316
exons per gene 2.60 2
# of gene models 16412


Collaborators

Jo Anne Crouch, USDA-ARS, Beltsville, MD

Michael Thon, University of Salamanca, Spain

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Baroncelli R, Cobo-Díaz JF, Benocci T, Peng M, Battaglia E, Haridas S, Andreopoulos W, LaButti K, Pangilinan J, Lipzen A, Koriabine M, Bauer D, Le Floch G, Mäkelä MR, Drula E, Henrissat B, Grigoriev IV, Crouch JA, de Vries RP, Sukno SA, Thon MR
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
Gigascience. 2024 Jan 2;13():. doi: 10.1093/gigascience/giae036

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.