Info • Colletotrichum costaricense IMI 309622

Status

The genome sequence and gene prediction of Colletotrichum costaricense IMI 309622 have not been determined by the Joint Genome Institute (JGI), but were provided by Riccardo Baroncelli at the University of Salamanca. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

Summary statistics for the Colletotrichum costaricense release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.63
Sequencing read coverage depth
# of contigs 73
# of scaffolds 70
# of scaffolds >= 2Kbp 56
Scaffold N50 8
Scaffold L50 (Mbp) 2.42
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.78, 3.49, 3.49


Gene Models ExternalModels
length (bp) of: average median
gene 1449 1218
transcript 1281 1062
exon 482 268
intron 103 66
description:
protein length (aa) 427 354
exons per gene 2.66 2
# of gene models 17126


Funding

This project was not sequenced at the JGI.