Info • Colletotrichum cuscutae IMI 304802

Status

The genome sequence and gene prediction of Colletotrichum cuscutae IMI 304802 have not been determined by the Joint Genome Institute (JGI), but were provided by Riccardo Baroncelli at the University of Salamanca. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

Summary statistics for the Colletotrichum cuscutae release are below.
Genome Assembly
Genome Assembly size (Mbp) 80.45
Sequencing read coverage depth
# of contigs 326
# of scaffolds 325
# of scaffolds >= 2Kbp 319
Scaffold N50 47
Scaffold L50 (Mbp) 0.51
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.78, 1.73, 1.46


Gene Models ExternalModels
length (bp) of: average median
gene 1499 1200
transcript 1267 1038
exon 348 147
intron 90 55
description:
protein length (aa) 422 346
exons per gene 3.64 2
# of gene models 17289


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Baroncelli R, Cobo-Díaz JF, Benocci T, Peng M, Battaglia E, Haridas S, Andreopoulos W, LaButti K, Pangilinan J, Lipzen A, Koriabine M, Bauer D, Le Floch G, Mäkelä MR, Drula E, Henrissat B, Grigoriev IV, Crouch JA, de Vries RP, Sukno SA, Thon MR
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
Gigascience. 2024 Jan 2;13():. doi: 10.1093/gigascience/giae036

Funding

This project was not sequenced at the JGI.