Info • Colletotrichum fructicola Nara gc5

Status

The genome sequence and gene prediction of Colletotrichum Colletotrichum fructicola Nara gc5 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 20, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 886 ExternalModels were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 59.54
Sequencing read coverage depth 174.0x
# of contigs 12
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 5
Scaffold L50 (Mbp) 5.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.28, 6.89, 6.77


Gene Models FilteredModels1
length (bp) of: average median
gene 1615 1388
transcript 1436 1218
exon 457 242
intron 86 60
description:
protein length (aa) 479 406
exons per gene 3.14 3
# of gene models 16502


Genome Reference(s)

Funding

This project was not sequenced at the JGI.