Info • Colletotrichum gloeosporioides Cg-14

Status

The genome sequence and gene models of Colletotrichum gleosporioides Cg-14 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 53.21
Sequencing read coverage depth
# of contigs 4537
# of scaffolds 4537
# of scaffolds >= 2Kbp 3068
Scaffold N50 656
Scaffold L50 (Mbp) 0.03
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.13, 0.12, 0.11


Gene Models ExternalModels
length (bp) of: average median
gene 1424 1206
transcript 1241 1074
exon 447 246
intron 105 60
description:
protein length (aa) 414 358
exons per gene 2.77 2
# of gene models 16538


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Alkan N, Meng X, Friedlander G, Reuveni E, Sukno S, Sherman A, Thon M, Fluhr R, Prusky D
Global aspects of pacC regulation of pathogenicity genes in Colletotrichum gloeosporioides as revealed by transcriptome analysis.
Mol Plant Microbe Interact. 2013 Nov;26(11):1345-58. doi: 10.1094/MPMI-03-13-0080-R

Funding

This project was not sequenced at the JGI.