Status
The genome and gene models of Colletotrichum higginsianum were downloaded from NCBI on Sept 6, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Colletotrichum higginsianum
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 45.95 |
| Sequencing read coverage depth | 133.0x |
| # of contigs | 11 |
| # of scaffolds | 11 |
| # of scaffolds >= 2Kbp | 11 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 5.33 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.04, 6.01, 5.99 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1568 | 1319 |
| transcript | 1410 | 1170 |
| exon | 517 | 289 |
| intron | 94 | 69 |
| description: | ||
| protein length (aa) | 470 | 390 |
| exons per gene | 2.73 | 2 |
| # of gene models | 13330 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Zampounis A, Pigné S, Dallery JF, Wittenberg AH, Zhou S, Schwartz DC, Thon MR, O'Connell RJ
Genome Sequence and Annotation of Colletotrichum higginsianum, a Causal Agent of Crucifer Anthracnose Disease.
Genome Announc. 2016 Aug 18;4(4):. doi: 10.1128/genomeA.00821-16
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, Damm U, Buiate EA, Epstein L, Alkan N, Altmüller J, Alvarado-Balderrama L, Bauser CA, Becker C, Birren BW, Chen Z, Choi J, Crouch JA, Duvick JP, Farman MA, Gan P, Heiman D, Henrissat B, Howard RJ, Kabbage M, Koch C, Kracher B, Kubo Y, Law AD, Lebrun MH, Lee YH, Miyara I, Moore N, Neumann U, Nordström K, Panaccione DG, Panstruga R, Place M, Proctor RH, Prusky D, Rech G, Reinhardt R, Rollins JA, Rounsley S, Schardl CL, Schwartz DC, Shenoy N, Shirasu K, Sikhakolli UR, Stüber K, Sukno SA, Sweigard JA, Takano Y, Takahara H, Trail F, van der Does HC, Voll LM, Will I, Young S, Zeng Q, Zhang J, Zhou S, Dickman MB, Schulze-Lefert P, Ver Loren van Themaat E, Ma LJ, Vaillancourt LJ
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.
Nat Genet. 2012 Sep;44(9):1060-5. doi: 10.1038/ng.2372
Zampounis A, Pigné S, Dallery JF, Wittenberg AH, Zhou S, Schwartz DC, Thon MR, O'Connell RJ
Genome Sequence and Annotation of Colletotrichum higginsianum, a Causal Agent of Crucifer Anthracnose Disease.
Genome Announc. 2016 Aug 18;4(4):. doi: 10.1128/genomeA.00821-16
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, Damm U, Buiate EA, Epstein L, Alkan N, Altmüller J, Alvarado-Balderrama L, Bauser CA, Becker C, Birren BW, Chen Z, Choi J, Crouch JA, Duvick JP, Farman MA, Gan P, Heiman D, Henrissat B, Howard RJ, Kabbage M, Koch C, Kracher B, Kubo Y, Law AD, Lebrun MH, Lee YH, Miyara I, Moore N, Neumann U, Nordström K, Panaccione DG, Panstruga R, Place M, Proctor RH, Prusky D, Rech G, Reinhardt R, Rollins JA, Rounsley S, Schardl CL, Schwartz DC, Shenoy N, Shirasu K, Sikhakolli UR, Stüber K, Sukno SA, Sweigard JA, Takano Y, Takahara H, Trail F, van der Does HC, Voll LM, Will I, Young S, Zeng Q, Zhang J, Zhou S, Dickman MB, Schulze-Lefert P, Ver Loren van Themaat E, Ma LJ, Vaillancourt LJ
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.
Nat Genet. 2012 Sep;44(9):1060-5. doi: 10.1038/ng.2372
Funding
This project was not sequenced at the JGI.
