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Info • Colletotrichum incanum MAFF 238712

Status

The genome sequence and gene prediction of Colletotrichum incanum MAFF 238712 have not been determined by the Joint Genome Institute (JGI), but were provided by Ken Shirasu at the RIKEN Center for Sustainable Resource Science. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by Ken Shirasu and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Colletotrichum incanum release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.25
Sequencing read coverage depth
# of contigs 2523
# of scaffolds 1036
# of scaffolds >= 2Kbp 472
Scaffold N50 52
Scaffold L50 (Mbp) 0.29
# of gaps 1487
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 1.06, 0.97, 0.95


Gene Models ExternalModels
length (bp) of: average median
gene 1606 1385
transcript 1449 1227
exon 504 276
intron 86 62
description:
protein length (aa) 483 409
exons per gene 2.87 2
# of gene models 11852


Genome Reference(s)

Funding

This project was not sequenced at the JGI.