Info • Colletotrichum navitas CBS125086 v1.0

Status

[April 2017] The Colletotrichum navitas 9038-158a (CBS125086) genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum navitas v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.44
Sequencing read coverage depth 201.93x
# of contigs 703
# of scaffolds 703
# of scaffolds >= 2Kbp 659
Scaffold N50 42
Scaffold L50 (Mbp) 0.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.58, 1.61, 1.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53810 49603 92.2%
Ests est.fasta 159631442 158263306 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1608 1353
transcript 1443 1191
exon 538 337
intron 100 66
description:
protein length (aa) 415 331
exons per gene 2.68 2
# of gene models 14682


Collaborators

Michael Thon, University of Salamanca, Spain

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.