Info • Colletotrichum nymphaeae SA-01


The genome sequence and gene prediction of Colletotrichum nymphaeae SA-01 have not been determined by the JGI, but were provided by Michael Thon at the University of Salamanca, Spain. Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.


Summary statistics for the Colletotrichum nymphaeae SA-01 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.96
Sequencing read coverage depth 46.94x
# of contigs 1924
# of scaffolds 1884
# of scaffolds >= 2Kbp 1116
Scaffold N50 166
Scaffold L50 (Mbp) 0.09
# of gaps 40
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.49, 0.40, 0.36

Gene Models ExternalModels
length (bp) of: average median
gene 1610 1380
transcript 1441 1221
exon 511 290
intron 95 64
protein length (aa) 480 407
exons per gene 2.82 2
# of gene models 14404

Genome Reference(s)


This project was not sequenced at the JGI.