Info • Leotiomycetes sp. R113_184 v1.0

Status

[June 2021] [May 2021] The Leotiomycetes sp. R113-184 genome was sequenced with Illumina NovaSEQ6000 platform, assembled with MEGAHIT v1.2.9, binned using METABAT version 2.12.1, and annotated with the JGI Annotation Pipeline.

Summary statistics for the Leotiomycetes sp. R113-184 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.09
Sequencing read coverage depth 18.99x
# of contigs 422
# of scaffolds 422
# of scaffolds >= 2Kbp 422
Scaffold N50 51
Scaffold L50 (Mbp) 0.13
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.36, 0.35, 0.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTClusters 12533 12366 98.7%
Ests est.fasta 442812 431932 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1746 1484
transcript 1584 1338
exon 572 317
intron 94 58
description:
protein length (aa) 503 421
exons per gene 2.77 2
# of gene models 7458


Collaborators

Mike Wilkins - Colorado State University

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Nelson AR, Narrowe AB, Rhoades CC, Fegel TS, Daly RA, Roth HK, Chu RK, Amundson KK, Young RB, Steindorff AS, Mondo SJ, Grigoriev IV, Salamov A, Borch T, Wilkins MJ
Wildfire-dependent changes in soil microbiome diversity and function.
Nat Microbiol. 2022 Aug 25;():. doi: 10.1038/s41564-022-01203-y

Links

Funding

This project was not sequenced at the JGI.