Info • Colletotrichum orchidophilum IMI 309357


The genome sequence and gene models of Colletotrichum orchidophilum IMI 309357 have not been determined by the JGI, but were downloaded from NCBI on Oct 25, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Assembly Method :: SPAdes v. 3.8.2
Sequencing Technology :: Illumina HiSeq


Summary statistics for the Colletotrichum orchidophilum release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.56
Sequencing read coverage depth 200.0x
# of contigs 328
# of scaffolds 321
# of scaffolds >= 2Kbp 321
Scaffold N50 57
Scaffold L50 (Mbp) 0.28
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.84, 0.82, 0.80

Gene Models ExternalModels
length (bp) of: average median
gene 1494 1263
transcript 1323 1101
exon 492 268
intron 103 67
protein length (aa) 441 367
exons per gene 2.69 2
# of gene models 14496

Genome Reference(s)


This project was not sequenced at the JGI.