We will have a brief downtime on Tuesday May 28 between 8:45 and 9:30 am PDT due to network equipment maintenance.
Info • Colletotrichum orbiculare 104-T

Status

The genome sequence and gene prediction of Colletotrichum orbiculare 104-T have not been determined by the Joint Genome Institute (JGI), but were provided by Ken Shirasu at the RIKEN Center for Sustainable Resource Science. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by Ken Shirasu and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Colletotrichum orbiculare release are below.
Genome Assembly
Genome Assembly size (Mbp) 90.09
Sequencing read coverage depth
# of contigs 7981
# of scaffolds 3370
# of scaffolds >= 2Kbp 526
Scaffold N50 59
Scaffold L50 (Mbp) 0.42
# of gaps 4611
% of scaffold length in gaps 2.9%
Three largest Scaffolds (Mbp) 2.15, 2.12, 1.71


Gene Models ExternalModels
length (bp) of: average median
gene 1617 1371
transcript 1416 1194
exon 469 250
intron 101 64
description:
protein length (aa) 472 398
exons per gene 3.02 2
# of gene models 13348


Genome Reference(s)

Funding

This project was not sequenced at the JGI.