Info • Collariella robusta PSN 660 v1.0

Status

[April 2023] The Collariella robusta PSN 660 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 28.19
Sequencing read coverage depth 221.43x
# of contigs 74
# of scaffolds 65
# of scaffolds >= 2Kbp 59
Scaffold N50 6
Scaffold L50 (Mbp) 1.60
# of gaps 9
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.94, 2.91, 2.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36254 35184 97.0%
Ests est.fasta 188531743 187077426 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1950 1649
transcript 1787 1511
exon 640 396
intron 93 61
description:
protein length (aa) 496 397
exons per gene 2.79 2
# of gene models 9570


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.