Info • Colletotrichum siamense Cg363

Status

The genome sequence and gene prediction of Colletotrichum siamense Cg363 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 20, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 418 ExternalModels were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 62.94
Sequencing read coverage depth 166.0x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 5
Scaffold L50 (Mbp) 5.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.97, 7.41, 7.26


Gene Models FilteredModels1
length (bp) of: average median
gene 1617 1393
transcript 1462 1245
exon 502 276
intron 83 60
description:
protein length (aa) 487 415
exons per gene 2.91 2
# of gene models 14772


Genome Reference(s)

Funding

This project was not sequenced at the JGI.