Status
The genome sequence and gene prediction of Colletotrichum tofieldiae CBS 168.49 have not been determined by the Joint Genome Institute (JGI), but were provided by Ken Shirasu at the RIKEN Center for Sustainable Resource Science. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Summary statistics for the Colletotrichum tofieldiae
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.96 |
| Sequencing read coverage depth | |
| # of contigs | 1301 |
| # of scaffolds | 1300 |
| # of scaffolds >= 2Kbp | 385 |
| Scaffold N50 | 54 |
| Scaffold L50 (Mbp) | 0.29 |
| # of gaps | 1 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.44, 1.02, 0.93 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1508 | 1265 |
| transcript | 1320 | 1086 |
| exon | 478 | 267 |
| intron | 109 | 66 |
| description: | ||
| protein length (aa) | 440 | 362 |
| exons per gene | 2.76 | 2 |
| # of gene models | 16451 |
Funding
This project was not sequenced at the JGI.
