Info • Coniochaeta ligniaria CBS 111746

Status

The genome of Coniochaeta ligniaria was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora (spatafoj@science.oregonstate.edu). JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Coniochaeta ligniaria genome v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.70
Sequencing read coverage depth 60x
# of contigs 4518
# of scaffolds 1566
# of scaffolds >= 2Kbp 1101
Scaffold N50 137
Scaffold L50 (Mbp) 0.09
# of gaps 2952
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 0.42, 0.40, 0.35


Gene Models ExternalModels
length (bp) of: average median
gene 1738 1431
transcript 1498 1233
exon 502 270
intron 123 69
description:
protein length (aa) 499 411
exons per gene 2.98 2
# of gene models 12318


Collaborators

PI: Joey Spatafora, Oregon State University

Funding

This project was not sequenced at the JGI.