Status
The genome of Coniochaeta ligniaria was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Coniochaeta ligniaria genome
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 43.70 |
| Sequencing read coverage depth | 60x |
| # of contigs | 4518 |
| # of scaffolds | 1566 |
| # of scaffolds >= 2Kbp | 1101 |
| Scaffold N50 | 137 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 2952 |
| % of scaffold length in gaps | 1.1% |
| Three largest Scaffolds (Mbp) | 0.42, 0.40, 0.35 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1738 | 1431 |
| transcript | 1498 | 1233 |
| exon | 502 | 270 |
| intron | 123 | 69 |
| description: | ||
| protein length (aa) | 499 | 411 |
| exons per gene | 2.98 | 2 |
| # of gene models | 12318 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.
