Info • Coniophora olivacea MUCL 20566 v1.0

Status

Assembly v1.0 (November 2015). Coniophora olivacea was sequenced using Illumina HiSeq platform and assembled with AllPathsLG to produce a main assembly with 863 scaffolds and 39.07 Mb.

 

Summary statistics for the Coniophora olivacea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.07
Sequencing read coverage depth 137.7x
# of contigs 990
# of scaffolds 863
# of scaffolds >= 2Kbp 682
Scaffold N50 80
Scaffold L50 (Mbp) 0.14
# of gaps 127
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.79, 0.67, 0.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 95854073 93787344 97.8%
Other Assembled_EST_contigs 66567 64717 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1768 1530
transcript 1440 1215
exon 249 152
intron 70 59
description:
protein length (aa) 415 336
exons per gene 5.79 5
# of gene models 14928


Collaborators

Joseph Spataphora, Oregon State University

Lucía Ramírez, Public Universiy of Navarre

Antonio G. Pisabarro, Public Universiy of Navarre

Raúl Castanera, Public University of Navarre

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Castanera R, Pérez G, López-Varas L, Amselem J, LaButti K, Singan V, Lipzen A, Haridas S, Barry K, Grigoriev IV, Pisabarro AG, Ramírez L
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.
BMC Genomics. 2017 Nov 16;18(1):883. doi: 10.1186/s12864-017-4243-z

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.