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Info • Coniophora puteana v1.0

Status

The draft assembly used the Illumina and Roche (454) sequencing technologies.  The Illumina data were assembled with Velvet.  The Velvet assembly was subsequently shredded, combined with Roche data, and assembled with Newbler.

Summary statistics for the Coniophora puteana v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 42.97
Sequencing read coverage depth 49.54
# of contigs 1034
# of scaffolds 210
# of scaffolds >= 2Kbp 210
Scaffold N50 7
Scaffold L50 (Mbp) 2.40
# of gaps 412
% of scaffold length in gaps 2.6%
Three largest Scaffolds (Mbp) 4.54, 3.75, 3.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 12685 12230 96.4%
Ests ESTs 1030679 1004454 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1910 1637
transcript 1518 1280
exon 248 150
intron 79 59
description:
protein length (aa) 438 360
exons per gene 6.11 5
# of gene models 13761


Collaborators

  • PI: Igor Grigoriev, DOE Joint Genome Institute
  • David Hibbett, Clark University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.