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Info • Coprinellus pellucidus v1.0

Status

[Dec 2015] The Coprinellus pellucidus TEP2b genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Coprinellus pellucidus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.56
Sequencing read coverage depth 167.7x
# of contigs 2262
# of scaffolds 1355
# of scaffolds >= 2Kbp 1121
Scaffold N50 109
Scaffold L50 (Mbp) 0.09
# of gaps 907
% of scaffold length in gaps 2.0%
Three largest Scaffolds (Mbp) 0.86, 0.78, 0.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 37555 34463 91.8%
Ests est.fasta 124165548 119172959 96.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1682 1407
transcript 1396 1145
exon 278 168
intron 73 60
description:
protein length (aa) 413 329
exons per gene 5.03 4
# of gene models 16047


Collaborators

Kabir Peay, Stanford University

Jason Stajich, UC Riverside

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.