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Info • Coprinopsis sclerotiger v1.0

Status

[Dec 2015] The Coprinellus sclerotiger TEP19c genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Coprinellus sclerotiger v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.50
Sequencing read coverage depth 127.7x
# of contigs 305
# of scaffolds 249
# of scaffolds >= 2Kbp 242
Scaffold N50 28
Scaffold L50 (Mbp) 0.28
# of gaps 56
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.40, 1.09, 0.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27809 27193 97.8%
Ests est.fasta 122623929 119812039 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1839 1594
transcript 1535 1307
exon 278 165
intron 69 59
description:
protein length (aa) 444 364
exons per gene 5.53 4
# of gene models 12039


Collaborators

Kabir Peay, Stanford University

Jason Stajich, UC Riverside



Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.