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Info • Cortinarius sp. KIS3-TL2766 v1.0

Status

[March 2020] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Cortinarius sp. KIS3-TL2766 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.11
Sequencing read coverage depth 284.28x
# of contigs 495
# of scaffolds 495
# of scaffolds >= 2Kbp 495
Scaffold N50 29
Scaffold L50 (Mbp) 0.42
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.30, 1.50, 1.47


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 60796 57809 95.1%
Ests est.fasta 230286844 227579033 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1856 1601
transcript 1503 1290
exon 229 141
intron 65 57
description:
protein length (aa) 441 359
exons per gene 6.57 5
# of gene models 11569


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.