Info • Cortinarius aff. campbellae TAS5-PSC4363 v1.0


[October 2018] The Cortinarius aff. campbellae TAS5-PSC4363 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assemblied separately and is available on the Download page.

The RNA samples were heavily contaminated by other fungal species, accounting for the low RNA mapping rates.

Summary statistics for the Cortinarius aff. campbellae TAS5-PSC4363 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 76.97
Sequencing read coverage depth 201.52x
# of contigs 1204
# of scaffolds 1204
# of scaffolds >= 2Kbp 1178
Scaffold N50 81
Scaffold L50 (Mbp) 0.22
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.72, 1.41, 1.19

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 205614 54662 26.6%
Ests est.fasta 277073058 106519117 38.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1692 1415
transcript 1351 1119
exon 229 142
intron 71 57
protein length (aa) 404 323
exons per gene 5.90 5
# of gene models 17407


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.