Info • Phlegmacium glaucopus AT 2004 276 v2.0

Status

Assembly v2 (April 2013) is an improved draft assembly. A total of 769 scaffolds and 63.5 Mbp were assembled from Solexa gDNAs using AllPathsLG and improved with PacBio reads using PBJelly.

Summary statistics for the Cortinarius glaucopus AT 2004 276 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 63.45
Sequencing read coverage depth 107.0x
# of contigs 2103
# of scaffolds 769
# of scaffolds >= 2Kbp 590
Scaffold N50 42
Scaffold L50 (Mbp) 0.43
# of gaps 1334
% of scaffold length in gaps 4.4%
Three largest Scaffolds (Mbp) 2.80, 1.40, 1.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 45317 42594 94.0%


Gene Models FilteredModels7
length (bp) of: average median
gene 1514 1171
transcript 1184 918
exon 235 147
intron 83 58
description:
protein length (aa) 346 254
exons per gene 5.05 4
# of gene models 20377


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.