Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Boliniaceae sp. AZ0804 v1.0

Status

[August 2018] The Boliniaceae sp. AZ0804 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Boliniaceae sp. AZ0804 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.03
Sequencing read coverage depth 61.38x
# of contigs 132
# of scaffolds 132
# of scaffolds >= 2Kbp 128
Scaffold N50 9
Scaffold L50 (Mbp) 1.20
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.80, 2.95, 2.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44779 43342 96.8%
Ests est.fasta 70044670 69015343 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1985 1734
transcript 1748 1506
exon 561 326
intron 114 83
description:
protein length (aa) 490 403
exons per gene 3.11 3
# of gene models 9820


Collaborators

Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.