Info • Myceliophthora similis CBS 632.67 v1.0

Status

[July 2018] The Myceliophthora similis CBS 632.67 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Myceliophthora similis CBS 632.67 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.81
Sequencing read coverage depth 64.1x
# of contigs 287
# of scaffolds 72
# of scaffolds >= 2Kbp 67
Scaffold N50 8
Scaffold L50 (Mbp) 1.15
# of gaps 215
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 2.71, 2.42, 2.10


Gene Models FilteredModels1
length (bp) of: average median
gene 1740 1450
transcript 1535 1272
exon 507 267
intron 103 70
description:
protein length (aa) 512 424
exons per gene 3.02 3
# of gene models 9392


Collaborators

Don Natvig, University of New Mexico, NM

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, Kuo A, Mondo S, Riley R, Otillar R, Haridas S, Lipzen A, Grimwood J, Schmutz J, Clum A, Reid ID, Moisan MC, Butler G, Nguyen TTM, Dewar K, Conant G, Drula E, Henrissat B, Hansel C, Singer S, Hutchinson MI, de Vries RP, Natvig DO, Powell AJ, Tsang A, Grigoriev IV
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.
Commun Biol. 2024 Sep 12;7(1):1124. doi: 10.1038/s42003-024-06681-w

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.