Status
[April 2024] The Corynespora sp. 303A_c4.1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 42.07 |
| Sequencing read coverage depth | 191.73x |
| # of contigs | 1212 |
| # of scaffolds | 1190 |
| # of scaffolds >= 2Kbp | 947 |
| Scaffold N50 | 80 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 22 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.82, 0.58, 0.56 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 46697 | 44053 | 94.3% |
| Ests | est.fasta | 214884104 | 211512063 | 98.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1822 | 1567 |
| transcript | 1662 | 1425 |
| exon | 569 | 354 |
| intron | 85 | 57 |
| description: | ||
| protein length (aa) | 474 | 387 |
| exons per gene | 2.92 | 2 |
| # of gene models | 13541 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales
- JGI EcoGroup Portals: Endophytic Fungi Plant Pathogens
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
