Info • Crepidotus cesatii CBS 511.95 v1.0

Status

[July 2018] The Crepidotus cesatii CBS 511.95 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Crepidotus cesatii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.04
Sequencing read coverage depth 276.15x
# of contigs 235
# of scaffolds 235
# of scaffolds >= 2Kbp 232
Scaffold N50 23
Scaffold L50 (Mbp) 0.51
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.25, 1.21, 1.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 67499 62945 93.3%
Ests est.fasta 200389606 196619802 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1878 1631
transcript 1556 1344
exon 257 155
intron 66 56
description:
protein length (aa) 454 374
exons per gene 6.06 5
# of gene models 12891


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, WA, USA

Joseph Spatafora, Oregon State University, OR, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.