Info • Crepidotus variabilis CBS 506.95 v1.0

Status

(Dec 2015) The Crepidotus variabilis CBS 506.95 genome was sequenced using Illumina technology and assembled with AllPathsLG.

Summary statistics for the Crepidotus variabilis CBS 506.95 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.58
Sequencing read coverage depth 111.2x
# of contigs 1097
# of scaffolds 435
# of scaffolds >= 2Kbp 359
Scaffold N50 31
Scaffold L50 (Mbp) 0.32
# of gaps 662
% of scaffold length in gaps 2.5%
Three largest Scaffolds (Mbp) 1.51, 1.50, 1.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41955 41622 99.2%
Ests est.fasta 177324609 176126033 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1748 1499
transcript 1457 1239
exon 258 157
intron 65 56
description:
protein length (aa) 416 339
exons per gene 5.66 4
# of gene models 14573


Collaborators

José María Barrasa, Universidad de Alcalá, Spain

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.