Info • Cristinia sonorae KKN 215 v1.0

Status

[July 2018] The Cristinia sonorae KKN 215 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cristinia sonorae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.13
Sequencing read coverage depth 162.86x
# of contigs 114
# of scaffolds 114
# of scaffolds >= 2Kbp 111
Scaffold N50 16
Scaffold L50 (Mbp) 0.65
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.57, 1.38, 1.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57673 54333 94.2%
Ests est.fasta 145413531 142305687 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1979 1731
transcript 1625 1418
exon 250 156
intron 66 59
description:
protein length (aa) 470 392
exons per gene 6.50 5
# of gene models 11356


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.