Info • Cronartium ribicola Cypress_4 v1.0


[May 2022] The Cronartium ribicola Cypress_4 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 211.63
Sequencing read coverage depth 39.41x
# of contigs 214
# of scaffolds 214
# of scaffolds >= 2Kbp 214
Scaffold N50 31
Scaffold L50 (Mbp) 2.05
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.15, 6.57, 5.94

RNA data suffers from contamination. Data set has good read mapping stats , but unusually low contig mapping stats. Unmapped reads megablast to order Pucciniales (ex. Lachnellula hyalina).

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 113016 63652 56.3%
Ests est.fasta 339337272 333649793 98.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1806 1531
transcript 1292 1035
exon 241 142
intron 120 85
protein length (aa) 373 278
exons per gene 5.36 4
# of gene models 14868




The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.