Info • Cryomyces minteri CCFEE 5187

Status

The Cryomyces minteri CCFEE 5187 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Apr 17, 2021. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 44.14
Sequencing read coverage depth 235.0x
# of contigs 4537
# of scaffolds 4502
# of scaffolds >= 2Kbp 3396
Scaffold N50 806
Scaffold L50 (Mbp) 0.02
# of gaps 35
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.19, 0.13, 0.10


Gene Models ExternalModels
length (bp) of: average median
gene 1625 1272
transcript 1354 1092
exon 438 246
intron 132 63
description:
protein length (aa) 451 364
exons per gene 3.09 3
# of gene models 13960


Collaborators

 

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Coleine C, Masonjones S, Sterflinger K, Onofri S, Selbmann L, Stajich JE
Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus.
Fungal Biol. 2020 May;124(5):458-467. doi: 10.1016/j.funbio.2020.01.005

Selbmann L, Zucconi L, Isola D, Onofri S
Rock black fungi: excellence in the extremes, from the Antarctic to space.
Curr Genet. 2015 Aug;61(3):335-45. doi: 10.1007/s00294-014-0457-7

Links

Funding

This project was not sequenced at the JGI.