Info • Cryptococcus terricola JCM 24523 v1.0

Status

[Oct 2015] The Cryptococcus terricola JCM 24523 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2011)
Mitochondrial genome was assembled separately and is available in the downloads section.

 

Summary statistics for the Cryptococcus terricola JCM 24523 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 23.19
Sequencing read coverage depth 84.3x
# of contigs 854
# of scaffolds 156
# of scaffolds >= 2Kbp 123
Scaffold N50 13
Scaffold L50 (Mbp) 0.66
# of gaps 698
% of scaffold length in gaps 3.6%
Three largest Scaffolds (Mbp) 1.75, 1.13, 0.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41453 35096 84.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2071 1805
transcript 1596 1341
exon 246 148
intron 89 71
description:
protein length (aa) 463 374
exons per gene 6.48 5
# of gene models 8560


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.