Info • Camillea tinctor CBS 203.56 v1.0

Status

[July 2019] The Camillea tinctor CBS 203.56 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Camillea tinctor CBS 203.56 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.01
Sequencing read coverage depth 129.632641345x
# of contigs 247
# of scaffolds 229
# of scaffolds >= 2Kbp 201
Scaffold N50 26
Scaffold L50 (Mbp) 0.53
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.83, 1.79, 1.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 66257 64738 97.7%
Ests est.fasta 184544733 180326527 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2046 1834
transcript 1842 1640
exon 609 381
intron 103 74
description:
protein length (aa) 477 399
exons per gene 3.02 3
# of gene models 11860


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.