Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Teichospora sp. FL1471 v1.0

Status

[August 2018] The Teichospora sp. FL1471 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Teichospora sp. FL1471 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.67
Sequencing read coverage depth 170.86x
# of contigs 47
# of scaffolds 47
# of scaffolds >= 2Kbp 46
Scaffold N50 9
Scaffold L50 (Mbp) 1.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.85, 2.15, 2.04


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34677 32497 93.7%
Ests est.fasta 100719449 99810895 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1861 1638
transcript 1717 1501
exon 596 377
intron 78 56
description:
protein length (aa) 481 403
exons per gene 2.88 2
# of gene models 10955


Collaborators

Jana U'Ren, University of Arizona, AZ

Betsy Arnold, University of Arizona, AZ

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.