Info • Cyathus striatus AH 40144 v1.0


The Cyathus striatus AH 40144 genome was sequenced using Illumina and PacBio technology, assembled with Falcon, improved with finisherSC, polished with Quiver, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.

The JGI annotation pipeline identified 4,529 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Cyathus striatus AH 40144 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 91.18
Sequencing read coverage depth
# of contigs 1562
# of scaffolds 1562
# of scaffolds >= 2Kbp 1555
Scaffold N50 90
Scaffold L50 (Mbp) 0.20
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.13, 1.39, 1.37

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59103 55189 93.4%
Ests est.fasta 184573242 177885941 96.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1464 1215
transcript 1143 932
exon 208 134
intron 74 57
protein length (aa) 334 261
exons per gene 5.49 4
# of gene models 23513


José María Barrasa, Universidad de Alcalá, Spain

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.