Status
The genome sequence and gene models of Cyberlindnera fabianii 65 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Cyberlindnera fabianii 65 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 12.19 |
| Sequencing read coverage depth | |
| # of contigs | 25 |
| # of scaffolds | 25 |
| # of scaffolds >= 2Kbp | 25 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 1.23 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.09, 1.71, 1.23 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1492 | 1257 |
| transcript | 1424 | 1212 |
| exon | 1090 | 900 |
| intron | 223 | 117 |
| description: | ||
| protein length (aa) | 475 | 404 |
| exons per gene | 1.31 | 1 |
| # of gene models | 5509 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
van Rijswijck IM, Derks MF, Abee T, de Ridder D, Smid EJ
Genome Sequences of Cyberlindnera fabianii 65, Pichia kudriavzevii 129, and Saccharomyces cerevisiae 131 Isolated from Fermented Masau Fruits in Zimbabwe.
Genome Announc. 2017 Apr 6;5(14):. doi: 10.1128/genomeA.00064-17
van Rijswijck IM, Derks MF, Abee T, de Ridder D, Smid EJ
Genome Sequences of Cyberlindnera fabianii 65, Pichia kudriavzevii 129, and Saccharomyces cerevisiae 131 Isolated from Fermented Masau Fruits in Zimbabwe.
Genome Announc. 2017 Apr 6;5(14):. doi: 10.1128/genomeA.00064-17
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales
Funding
This project was not sequenced at the JGI.
