Info • Cylindrobasidium torrendii FP15055 v1.0


[April 2013] The Cylindrobasidium torrendii FP15055 ss-10 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Cylindrobasidium torrendii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.57
Sequencing read coverage depth 134.3x
# of contigs 1222
# of scaffolds 1149
# of scaffolds >= 2Kbp 849
Scaffold N50 94
Scaffold L50 (Mbp) 0.09
# of gaps 73
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.53, 0.47, 0.43

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 24700 23554 95.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1655 1426
transcript 1418 1217
exon 274 172
intron 59 53
protein length (aa) 414 345
exons per gene 5.17 4
# of gene models 13940


Joseph Spatafora, Oregon State University, USA.

David Hibbett, Clark University, USA.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.