Status
[April 2013] The Cylindrobasidium torrendii FP15055 ss-10 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).
Summary statistics for the Cylindrobasidium torrendii v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.57 |
| Sequencing read coverage depth | 134.3x |
| # of contigs | 1222 |
| # of scaffolds | 1149 |
| # of scaffolds >= 2Kbp | 849 |
| Scaffold N50 | 94 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 73 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.53, 0.47, 0.43 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 24700 | 23554 | 95.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1655 | 1426 |
| transcript | 1418 | 1217 |
| exon | 274 | 172 |
| intron | 59 | 53 |
| description: | ||
| protein length (aa) | 414 | 345 |
| exons per gene | 5.17 | 4 |
| # of gene models | 13940 |
Collaborators
Joseph Spatafora, Oregon State University, USA.
David Hibbett, Clark University, USA.
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Fungal Genet Biol. 2015 Mar;76():78-92. doi: 10.1016/j.fgb.2015.02.002
Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Fungal Genet Biol. 2015 Mar;76():78-92. doi: 10.1016/j.fgb.2015.02.002
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
