Info • Cytospora chrysosperma CFL2056 v1.0


[November 2017] The Cytospora chrysosperma CFL2056 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cytospora chrysosperma v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.55
Sequencing read coverage depth 152.9x
# of contigs 100
# of scaffolds 100
# of scaffolds >= 2Kbp 99
Scaffold N50 13
Scaffold L50 (Mbp) 0.77
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.08, 2.10, 1.69

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42435 41018 96.7%
Ests est.fasta 117862641 114303394 97.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1899 1667
transcript 1692 1473
exon 586 379
intron 112 76
protein length (aa) 475 394
exons per gene 2.89 3
# of gene models 10847


Richard Hamelin, University of British Columbia

Philippe Tanguay and Marie-Josée Bergeron, Canadian Forest Service, Laurentian Forestry Centre.


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.