Info • Cytidiella melzeri FP 102339 v1.0

Status

[January 2017] The Cytidiella melzeri FP 102339 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cytidiella melzeri v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.89
Sequencing read coverage depth 203.93x
# of contigs 941
# of scaffolds 941
# of scaffolds >= 2Kbp 928
Scaffold N50 141
Scaffold L50 (Mbp) 0.11
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.58, 0.49, 0.46


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 78264 72377 92.5%
Ests est.fasta 142462926 119391901 83.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1695 1416
transcript 1372 1125
exon 236 150
intron 69 59
description:
protein length (aa) 408 327
exons per gene 5.82 5
# of gene models 13046


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.