Info • Daldinia sp. FL1419 v1.0

Status

[June 2019] The Daldinia sp. FL1419 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Daldinia sp. FL1419 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.56
Sequencing read coverage depth 42.4133496023x
# of contigs 894
# of scaffolds 889
# of scaffolds >= 2Kbp 729
Scaffold N50 67
Scaffold L50 (Mbp) 0.19
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.79, 0.64, 0.59


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42080 40628 96.5%
Ests est.fasta 97472501 96217631 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2023 1792
transcript 1853 1636
exon 626 394
intron 89 65
description:
protein length (aa) 482 406
exons per gene 2.96 3
# of gene models 10476


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.