Info • Dactylonectria estremocensis MPI-CAGE-AT-0021 v1.0

Status

[April 2018] The Dactylonectria estremocensis MPI-CAGE-AT-0021 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dactylonectria estremocensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 64.66
Sequencing read coverage depth 51.45x
# of contigs 115
# of scaffolds 115
# of scaffolds >= 2Kbp 112
Scaffold N50 12
Scaffold L50 (Mbp) 1.53
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.45, 3.85, 3.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47406 42178 89.0%
Ests est.fasta 134722535 133480449 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1740 1517
transcript 1578 1365
exon 543 341
intron 87 61
description:
protein length (aa) 453 374
exons per gene 2.91 2
# of gene models 19198


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.