Info • Dactylonectria macrodidyma MPI-CAGE-AT-0147 v1.0

Status

[June 2018] The Dactylonectria macrodidyma MPI-CAGE-AT-0147 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dactylonectria macrodidyma MPI-CAGE-AT-0147 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 77.33
Sequencing read coverage depth 99.7x
# of contigs 87
# of scaffolds 87
# of scaffolds >= 2Kbp 84
Scaffold N50 10
Scaffold L50 (Mbp) 2.13
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.20, 5.67, 4.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58780 52898 90.0%
Ests est.fasta 231701876 228770737 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1727 1512
transcript 1564 1362
exon 532 333
intron 86 61
description:
protein length (aa) 453 379
exons per gene 2.94 2
# of gene models 21304


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.