Info • Dacryopinax primogenitus DJM 731 SSP1 v1.0

Status

This draft assembly was produced using Sanger (Fosmids),  Roche (454)
and shredded consensus from velvet assembled illumina data. One round of gap
closure with gapResolution closed 50 gaps (12.4%).

Summary statistics for the Dacryopinax primogenitus DJM 731 SSP-1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 29.50
Sequencing read coverage depth 43.19
# of contigs 878
# of scaffolds 99
# of scaffolds >= 2Kbp 99
Scaffold N50 10
Scaffold L50 (Mbp) 1.23
# of gaps 779
% of scaffold length in gaps 6.4%
Three largest Scaffolds (Mbp) 2.11, 2.04, 1.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 12033 11554 96.0%
Ests ESTs 701007 676865 96.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1664 1379
transcript 1395 1154
exon 289 181
intron 72 53
description:
protein length (aa) 405 333
exons per gene 4.83 4
# of gene models 10242


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.