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Info • Dacrymyces fennicus OMC1656 v1.0

Status

[December 2018] The Dacrymyces fennicus OMC1656 genome was sequenced using PacBio, assembled with Falcon (v1.8.8), and annotated using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Dacrymyces fennicus OMC1656 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.18
Sequencing read coverage depth 120.91x
# of contigs 58
# of scaffolds 58
# of scaffolds >= 2Kbp 58
Scaffold N50 12
Scaffold L50 (Mbp) 1.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.54, 2.45, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 50183 40669 81.0%
Ests est.fasta 144088460 141080063 97.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1853 1621
transcript 1581 1377
exon 295 181
intron 65 56
description:
protein length (aa) 450 371
exons per gene 5.36 4
# of gene models 12386


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.