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Info • Dacrymyces tortus OMC1693 v1.0

Status

[March 2020] The Dacrymyces tortus OMC1693 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Dacrymyces tortus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.70
Sequencing read coverage depth 203.36x
# of contigs 85
# of scaffolds 85
# of scaffolds >= 2Kbp 85
Scaffold N50 13
Scaffold L50 (Mbp) 1.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.04, 1.96, 1.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61909 58907 95.2%
Ests est.fasta 101653275 100863551 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1815 1588
transcript 1527 1332
exon 262 155
intron 62 54
description:
protein length (aa) 436 361
exons per gene 5.82 5
# of gene models 15305


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.